David Dahmen, Axel Hutt, Giacomo Indiveri, Ann Kennedy, Jeremie Lefebvre, Luca Mazzucato, Adilson E. Motter, Rishikesh Narayanan, Melika Payvand , Henrike Planert , Richard Gast

Much effort has been spent clustering neurons into transcriptomic or functional cell types and characterizing the differences between them. Beyond subdividing neurons into categories, we must recognize that no two neurons are identical and that graded physiological or transcriptomic properties exist within cells of a given type. This often overlooked “within-type” heterogeneity is a specific neuronal implementation of what statistical physics refers to as “disorder” and exhibits rich computational properties, the identification of which may shed crucial insights into theories of brain function. In this perspective article, we address this gap by highlighting theoretical frameworks for the study of neural tissue heterogeneity and discussing the benefits and implications of within-type heterogeneity for neural network dynamics, computation, and self-organization.

Read the full article at: inria.hal.science

Read the full article at: www.pnas.org

José Ignacio Arroyo, Amahury J. Lopez-Diaz, Alejandro Maass, Carlos Gershenson, Pablo Marquet, Geoffrey West, Christopher P. Kempes

Understanding the extent to which genetic correlations change in response to environmental factors, such as temperature, is a poorly explored question, despite the importance of understanding how different processes will change with climate warming. Despite correlations between thermal performance traits having been reported in the literature for a few taxa and performance tasks, such as population growth rate, a comprehensive global analysis of the entire tree of life and multiple performance tasks remains an open challenge. To advance in this open question, we compile a database of 1,300 thermal response curves, encompassing 38 variable types related to individuals’ performance (including per capita population growth rate, photosynthetic rate, among others) and 1,125 different species, ranging from viruses to mammals, encompassing all major lineages of the tree of life. Our analysis reveals that among all possible relationships between traits and optimal performance, four traits form a line with a high goodness-of-fit, while the remaining traits exhibit a polygonal pattern, either a triangle or a tetrahedron. We derive a thermodynamic framework that explains the relationships described by a curve or line (as opposed to a surface or polygon), highlighting the linear relationship between maximum and minimum temperatures, as well as between maximum and optimum temperatures. We also discuss other generic trait evolution models, which could account for the other significant sublinear relationships, as well as the more general model, Pareto optimality theory, which could account for relationships in the form of lines or polygons. Our theoretical framework and empirical evidence suggest that, based on a single data point (e.g., minimum temperature), all critical temperature limits and maximum performance boundaries can be predicted using the estimated parameter from this study. Our results reveal universal scaling relationships in thermal performance, which could be useful for predicting changes in performance under scenarios of climate warming.

Read the full article at: www.biorxiv.org

See Also: A database of biological thermal performances

Xiangyi Meng, Benjamin Piazza, Csaba Both, Baruch Barzel, Albert-László Barabási

The brain’s connectome and the vascular system are examples of physical networks whose tangible nature influences their structure, layout, and ultimately their function. The material resources required to build and maintain these networks have inspired decades of research into wiring economy, offering testable predictions about their expected architecture and organisation. Here we empirically explore the local branching geometry of a wide range of physical networks, uncovering systematic violations of the long-standing predictions of length and volume minimisation. This leads to the hypothesis that predicting the true material cost of physical networks requires us to account for their full three-dimensional geometry, resulting in a largely intractable optimisation problem. We discover, however, an exact mapping of surface minimisation onto high-dimensional Feynman diagrams in string theory, predicting that with increasing link thickness, a locally tree-like network undergoes a transition into configurations that can no longer be explained by length minimisation. Specifically, surface minimisation predicts the emergence of trifurcations and branching angles in excellent agreement with the local tree organisation of physical networks across a wide range of application domains. Finally, we predict the existence of stable orthogonal sprouts, which not only are prevalent in real networks but also play a key functional role, improving synapse formation in the brain and nutrient access in plants and fungi.

Read the full article at: arxiv.org

Thomas F. Varley, Vaibhav P. Pai, Caitlin Grasso, Jeantine Lunshof, Michael Levin & Josh Bongard

Communicative & Integrative Biology 

Volume 18, 2025 – Issue 1

Understanding how populations of cells collectively coordinate activity to produce the complex structures and behaviors that characterize multicellular organisms, and which coordinated activities, if any, survive processes that reshape cells and tissues into organoids, are fundamental issues in modern biology. Here, we show how techniques from complex systems and multivariate information theory provide a framework for inferring the structure of collective organization in non-neural tissue. Many of these techniques were developed in the context of theoretical neuroscience, where these statistics have been found to be altered during different cognitive, clinical, or behavioral states, and are generally thought to be informative about the underlying dynamics linking biology to cognition. Here, we show that these same patterns of coordinated activity are also present in the aneural tissues of evolutionarily distant biological systems: preparations of embryonic Xenopus laevis tissue (known as “basal Xenobots”). These similarities suggest that such patterns of activity either arose independently in these two systems (epithelial constructs and brains); are epiphenomenological byproducts of other dynamics conserved across vastly different configurations of life; or somehow directly support adaptive behavior across diverse living systems. Finally, these results provide unambiguous support for the hypothesis that, despite their apparent simplicity as collections of non-neural epithelial cells, Xenobots are in fact integrated, complex systems in their own right, with sophisticated internal information structures.

Read the full article at: www.tandfonline.com