Month: November 2020

Exploring the Dynamic Organization of Random and Evolved Boolean Networks

Gianluca d’Addese, Salvatore Magrì, Roberto Serra, and Marco Villani

Algorithms 2020, 13(11), 272

 

The properties of most systems composed of many interacting elements are neither determined by the topology of the interaction network alone, nor by the dynamical laws in isolation. Rather, they are the outcome of the interplay between topology and dynamics. In this paper, we consider four different types of systems with critical dynamic regime and with increasingly complex dynamical organization (loosely defined as the emergent property of the interactions between topology and dynamics) and analyze them from a structural and dynamic point of view. A first noteworthy result, previously hypothesized but never quantified so far, is that the topology per se induces a notable increase in dynamic organization. A second observation is that evolution does not change dramatically the size distribution of the present dynamic groups, so it seems that it keeps track of the already present organization induced by the topology. Finally, and similarly to what happens in other applications of evolutionary algorithms, the types of dynamic changes strongly depend upon the used fitness function.

Source: www.mdpi.com

The distribution of inhibitory neurons in the C. elegans connectome facilitates self-optimization of coordinated neural activity

Alejandro Morales, Tom Froese

 

The nervous system of the nematode soil worm Caenorhabditis elegans exhibits remarkable complexity despite the worm’s small size. A general challenge is to better understand the relationship between neural organization and neural activity at the system level, including the functional roles of inhibitory connections. Here we implemented an abstract simulation model of the C. elegans connectome that approximates the neurotransmitter identity of each neuron, and we explored the functional role of these physiological differences for neural activity. In particular, we created a Hopfield neural network in which all of the worm’s neurons characterized by inhibitory neurotransmitters are assigned inhibitory outgoing connections. Then, we created a control condition in which the same number of inhibitory connections are arbitrarily distributed across the network. A comparison of these two conditions revealed that the biological distribution of inhibitory connections facilitates the self-optimization of coordinated neural activity compared with an arbitrary distribution of inhibitory connections.

Source: arxiv.org