One hundred and ten Zika virus genomes from ten countries and territories involved in the Zika virus epidemic reveal rapid expansion of the epidemic within Brazil and multiple introductions to other regions.

 

Zika virus evolution and spread in the Americas
Hayden C. Metsky, et al.

Nature 546, 411–415 (15 June 2017) doi:10.1038/nature22402

Source: www.nature.com

The “missing heritability” problem states that genetic variants in Genome-Wide Association Studies (GWAS) cannot completely explain the heritability of complex traits. Traditionally, the heritability of a phenotype is measured through familial studies using twins, siblings and other close relatives, making assumptions on the genetic similarities between them. When this heritability is compared to the one obtained through GWAS for the same traits, a substantial gap between both measurements arise with genome wide studies reporting significantly smaller values. Several mechanisms for this “missing heritability” have been proposed, such as epigenetics, epistasis, and sequencing depth. However, none of them are able to fully account for this gap in heritability. In this paper we provide evidence that suggests that in order for the phenotypic heritability of human traits to be broadly understood and accounted for, the compositional and functional diversity of the human microbiome must be taken into account. This hypothesis is based on several observations: (A) The composition of the human microbiome is associated with many important traits, including obesity, cancer, and neurological disorders. (B) Our microbiome encodes a second genome with nearly a 100 times more genes than the human genome, and this second genome may act as a rich source of genetic variation and phenotypic plasticity. (C) Human genotypes interact with the composition and structure of our microbiome, but cannot by themselves explain microbial variation. (D) Microbial genetic composition can be strongly influenced by the host’s behavior, its environment or by vertical and horizontal transmissions from other hosts. Therefore, genetic similarities assumed in familial studies may cause overestimations of heritability values. We also propose a method that allows the compositional and functional diversity of our microbiome to be incorporated to genome wide association studies.

 

The Human Microbiome and the Missing Heritability Problem

Santiago Sandoval-Motta, Maximino Aldana, Esperanza Martínez-Romero and Alejandro Frank

Front. Genet., 13 June 2017 | https://doi.org/10.3389/fgene.2017.00080

Source: journal.frontiersin.org

Information technologies today can inform each of us about the route with the shortest time, but they do not contain incentives to manage travellers such that we all get collective benefits in travel times. To that end we need travel demand estimates and target strategies to reduce the traffic volume from the congested roads during peak hours in a feasible way. During large events, the traffic inconveniences in large cities are unusually high, yet temporary, and the entire population may be more willing to adopt collective recommendations for collective benefits in traffic. In this paper, we integrate, for the first time, big data resources to estimate the impact of events on traffic and propose target strategies for collective good at the urban scale. In the context of the Olympic Games in Rio de Janeiro, we first predict the expected increase in traffic. To that end, we integrate data from mobile phones, Airbnb, Waze and transit information, with game schedules and expected attendance in each venue. Next, we evaluate different route choice scenarios for drivers during the peak hours. Finally, we gather information on the trips that contribute the most to the global congestion which could be redirected from vehicles to transit. Interestingly, we show that (i) following new route alternatives during the event with individual shortest times can save more collective travel time than keeping the routine routes used before the event, uncovering the positive value of information technologies during events; (ii) with only a small proportion of people selected from specific areas switching from driving to public transport, the collective travel time can be reduced to a great extent. Results are presented online for evaluation by the public and policymakers

 

Collective benefits in traffic during mega events via the use of information technologies
Yanyan Xu, Marta C. González
Published 12 April 2017.DOI: 10.1098/rsif.2016.1041

Royal Society Interface

April 2017
Volume 14, issue 129

Source: rsif.royalsocietypublishing.org

Energy saving mechanisms in nature allow following organisms to expend less energy than leaders. Queues, or ordered rows of individuals, may form when organisms exploit the available energy saving mechanism while travelling at near-maximal sustainable metabolic capacities; compact clusters form when group members travel well below maximal sustainable metabolic capacities. The group size range, given here as the ratio of the difference between the size of the largest and smallest group members, and the size of the largest member (as a percentage), has been hypothesized to correspond proportionately to the energy saving quantity because weaker, smaller, individuals sustain the speeds of stronger, larger, individuals by exploiting the energy saving mechanism (as a percentage). During migration, small individuals outside this range may perish, or form sub-groups, or simply not participate in migratory behaviour. We approximate drag forces for leading and following individuals in queues of the late Devonian (c. 370 Ma) trilobite Trimerocephalus chopini. Applying data from literature on Rectisura herculea, a living crustacean, we approximate the hypothetical walking speed and maximal sustainable speeds for T. chopini. Our findings reasonably support the hypothesis that among the population of fossilized queues of T. chopini reported in the literature, trilobite size range was 75%, while the size range within queues was 63%; this corresponds reasonably with drag reductions in following positions that permit c. 61.5% energy saving for trilobites following others in optimal low-drag positions. We model collective trilobite behaviour associated with hydrodynamic drafting.

 

Trilobite ‘pelotons’: possible hydrodynamic drag effects between leading and following trilobites in trilobite queues
Hugh Trenchard, Carlton E. Brett, Matjaž Perc

Palaeontology

Volume 60, Issue 4
July 2017
Pages 557–569

10.1111/pala.12301

Source: onlinelibrary.wiley.com