Month: February 2017

Synergy from reproductive division of labor and complexity drive the evolution of sex

Computer experiments, testing features proposed to explain the evolution of sexual recombination, show that this evolution is better described as a network of interactions between possible sexual forms, including diploidy, thelytoky, facultative sex, assortation, bisexuality, and division of labor, rather than a simple transition from parthenogenesis to sexual recombination. Results show that sex is an adaptation to manage genetic complexity in evolution; that bisexual reproduction emerges only among anisogamic diploids with a synergistic division of reproductive labor; and that facultative sex is more likely to evolve among haploids practicing assortative mating. Looking at the evolution of sex as a complex system explains better the diversity of sexual strategies known to exist in nature. The paper shows that Analytical mathematics used in theoretical biology has limitations in tackling complex problems. Switching to algorithmic mathematics, such as ABM, will be important in advancing our understanding of complex issues. More sophisticated models will enlighten more aspects of this complex dynamics with implications for the understanding biological and cultural evolution, intelligence, and complex systems in general.

 

Synergy from reproductive division of labor and complexity drive the evolution of sex
Klaus Jaffe

Source: arxiv.org

The Lexicocalorimeter: Gauging public health through caloric input and output on social media

We propose and develop a Lexicocalorimeter: an online, interactive instrument for measuring the “caloric content” of social media and other large-scale texts. We do so by constructing extensive yet improvable tables of food and activity related phrases, and respectively assigning them with sourced estimates of caloric intake and expenditure. We show that for Twitter, our naive measures of “caloric input”, “caloric output”, and the ratio of these measures are all strong correlates with health and well-being measures for the contiguous United States. Our caloric balance measure in many cases outperforms both its constituent quantities; is tunable to specific health and well-being measures such as diabetes rates; has the capability of providing a real-time signal reflecting a population’s health; and has the potential to be used alongside traditional survey data in the development of public policy and collective self-awareness. Because our Lexicocalorimeter is a linear superposition of principled phrase scores, we also show we can move beyond correlations to explore what people talk about in collective detail, and assist in the understanding and explanation of how population-scale conditions vary, a capacity unavailable to black-box type methods.

 

Alajajian SE, Williams JR, Reagan AJ, Alajajian SC, Frank MR, Mitchell L, et al. (2017) The Lexicocalorimeter: Gauging public health through caloric input and output on social media. PLoS ONE 12(2): e0168893. doi:10.1371/journal.pone.0168893

Source: journals.plos.org

See Also http://panometer.org/instruments/lexicocalorimeter/ 

An artificial immune system approach to automated program verification: Towards a theory of undecidability in biological computing

An immune system inspired Artificial Immune System (AIS) algorithm is presented, and is used for the purposes of automated program verification. Relevant immunological concepts are discussed and the field of AIS is briefly reviewed. It is proposed to use this AIS algorithm for a specific automated program verification task: that of predicting shape of program invariants. It is shown that the algorithm correctly predicts program invariant shape for a variety of benchmarked programs. Program invariants encapsulate the computability of a particular program, e.g. whether it performs a particular function correctly and whether it terminates or not. This work also lays the foundation for applying concepts of theoretical incomputability and undecidability to biological systems like the immune system that perform robust computation to eliminate pathogens.

 

Banerjee S. (2017) An artificial immune system approach to automated program verification: Towards a theory of undecidability in biological computing. PeerJ Preprints 5:e2690v1 https://doi.org/10.7287/peerj.preprints.2690v1

Source: peerj.com

The Anthropocene equation

The dominant external forces influencing the rate of change of the Earth System have been astronomical and geophysical during the planet’s 4.5-billion-year existence. In the last six decades, anthropogenic forcings have driven exceptionally rapid rates of change in the Earth System. This new regime can be represented by an ‘Anthropocene equation’, where other forcings tend to zero, and the rate of change under human influence can be estimated. Reducing the risk of leaving the glacial–interglacial limit cycle of the late Quaternary for an uncertain future will require, in the first instance, the rate of change of the Earth System to become approximately zero.

 

The Anthropocene equation
Owen Gaffney, Will Steffen

The Anthropocene Review

First Published February 10, 2017

Source: journals.sagepub.com

A matter of fact

This is a worrying time for those who believe government policies should be based on the best evidence. Pundits claim we’ve entered a postfactual era. Viral fake news stories spread alternative facts. On some issues, such as climate change and childhood vaccinations, many scientists worry their hard-won research findings have lost sway with politicians and the public, and feel their veracity is under attack. But just how should evidence shape policy? And why does it sometimes lose out? Those are just some of the questions tackled in this special section on evidence-based policymaking.

 

A matter of fact
David Malakoff
Science  10 Feb 2017:
Vol. 355, Issue 6325, pp. 562-563
DOI: 10.1126/science.355.6325.562

Source: science.sciencemag.org